Reef Fish Hotspots

Gerald R. Allen

      Editors note:  This study by Dr. Allen presents a survey of the comparative richness and localized uniqueness of reef fishes throughout the Indian and Pacific Oceans.  It is adapted from a scientific publication moderately edited  for non-specialists.  The original scientific references have been included for those who may wish to delve further.
     As a further point of comparison the greatest number of coral reef fish species recorded from any location in the Atlantic is 389 from Alligator Reef in the Florida Keys.  If you have been dazzled by the profusion of life on Caribbean reefs just imagine what  Indonesian reefs with over 5 times as many species must be like.

 

ENDEMIC REEF FISH SLIDESHOW
Introduction
The idea of "hotspots" or threatened areas of uniqueness and/or biological richness is being effectively used to establish conservation priorities. Until recently it has been applied mainly to terrestrial systems But now coral reef fishes are beginning to be used as general hotspot indicators for coral reefs in the Indo-Pacific region. A zoogeographic study involving 2051 species has reveled 35 sites of local endemism and indicated regional trends.

Endemism or biological uniqueness refers to species found only in a particular area. Indonesia is the leading country for endemism and also boasts the greatest total number of species. The Hawaiian Islands though much lower in total numbers exhibit the highest percentage of reef-fish endemism and tiny Malpelo Island, Colombia has the highest concentration of endemics restricted to a single small area. The hotspots data suggest that Indonesia and the Philippines are worthy of the highest conservation priority due to their extraordinary species diversity, significant endemism, and high degree of threat.

Conservation International is currently developing a global conservation strategy involving marine hotspots, with special emphasis on coral-reef areas. 

Although the broad general pattern of reef diversity is known detailed knowledge is far from complete for any region. Considering the huge gaps in taxonomic information for many groups, particularly invertebrates, it is convenient to use relatively well known "flagship" groups such as fishes as indicators of overall biodiversity. Fishes are finely adapted to a 

 combination of environmental factors, of which the availability of food and shelter are particularly important. Therefore, the local or regional reef fish community is a useful gauge of both habitat and overall biodiversity. A typical coral reef supports a wealth of fishes, which in turn depend on a complex food web involving myriad plants and invertebrates.

Methods
The present study involves analysis of reef fish distribution in the Indo-Pacific region for the purpose of identifying hotspots applicable to marine conservation priority. The analysis is restricted to shallow reef fishes, which are defined here as species that are wholly or mainly confined to coral reefs and intermingled habitats (sand and rubble patches, adjacent seagrass beds, etc.) less than 60 m deep. The 60-metre depth is near the lower limit of compressed air scuba diving, and also approximates the limit of most reef-building corals. 

More than 100 families of fishes are represented on Indo-Pacific coral reefs, but a relatively small portion of these constitute the majority of species. The bulk of the fauna is composed of the 29 families listed in Table 1.

This is especially true in the species-rich Indo-Australian Archipelago, where these families routinely constitute 85-90 percent of the total reef fish fauna. Of particular importance are the Gobiidae, Labridae, Pomacentridae, Apogonidae, Blennidae, Serranidae, Chaetodontidae, and Acanthuridae, which collectively make more than 50 percent of the fishes on any given reef.

Table 1. Indo-Pacific coral reef fish families*

Muraenidae (Morays) Chaetodontidae (Butterflyfishes)
Holocentridae (Squirrelfishes & Soldierfishes) Pomacanthidae (Angelfishes)
Syngnathidae (Pipefishes & Seahorses) Pomacentridae (Damselfishes)
Scorpaenidae (Scorpionfishes) Labridae (Wrasses)
Serranidae (Sea basses & Groupers) Scaridae (Parrotfishes)
Pseudochromidae (Dottybacks) Pinguipedidae (Sandperches)
Cirrhitidae (Hawkfishes) Blenniidae (Blennies)
Apogonidae (Cardinalfishes) Gobiidae (Gobies)
Carangidae (Jacks or Trevallies) Microdesmidae (Wormfishes & Dartfishes)
Lutjanidae (Snappers) Siganidae (Rabbitfishes)
Caesionidae (Fusiliers) Acanthuridae (Surgeonfishes)
Haemulidae (Sweetlips or Grunts) Balistidae (Triggerfishes)
Lethrinidae (Emperors) Monacanthidae (Filefishes)
Nemipteridae (Coral Breams) Tetraodontidae (Puffers)
Mullidae (Goatfishes)  

*Families in bold print are the ones used here for the analysis of endemism (see following section).


Analysis of Endemism
Seventeen of the 29 principal families were utilized, containing a total of 2051 species (Table 2). In most cases, the entire family was considered, but for Syngnathidae, Serranidae, Pseudochromidae, and Tetraodontidae the analysis was limited to particular subfamilies and genera. The various groups were selected not only because they are among the most speciose on coral reefs (and therefore result in high 

resolution of endemic hotspots), but also because
they are relatively well collected and studied. Reproductive biology was another important consideration. Consequently, there is good representation of groups that exhibit parental egg care and have a relatively limited pelagic larval stage (eg. psedochromids, apogonids, pomacentrids, and blenniids). In general, these groups show a much higher degree of localized endemism compared to fishes with a more lengthy pelagic larval stage which leads to wider distribution. 

Table 2. Fish groups used for Indo-Pacific hotspots analysis

Family/ subfamily/ genus Species Primary references
Syngnathinae  175 Dawson 1985
Holocentridae 58 Randall & Greenfield 1996, Randall 1998
Epinephelinae  105 Randall & Heemstra 1991
Pseudochrominae 100 A. Gill pers. comm.
Apogonidae 263 Allen in preparation
Lutjanidae 45 Allen & Talbot 1985
Caesionidae 20 Carpenter 1987
Chaetodontidae 105 Allen et al. 1998
Pomacanthidae 70 Allen, et al. 1998
Pomacentridae 291 Allen 1991
Labridae 330 Parenti & Randall 2000
Scaridae 67 Parenti & Randall 2000
Blenniidae 263 numerous references
Microdesmidae 40 Randall & Hoese 1985
Acanthuridae 66 Randall in press
Siganidae 21 Woodland 1990
Tetraodontidae
(Arothron, Canthigaster)
32 Allen & Randall 1977, Myers, 1999

 


Both published and unpublished distribution maps and information were consulted for each species. Actual analysis consisted of screening the known distribution of each species, then assigning them to various categories (eg. Indian Ocean, Western Pacific, Red Sea, Hawaiian Islands, Easter Island, etc.). The resultant information was then used to construct the maps appearing in Figures 1-2.

Results
  Species Diversity
A review of relatively recent published faunal checklists of colleagues was undertaken and combined with the author's personal survey data for Australia, Indonesia, Malaysia, Singapore, Philippines, and Papua New Guinea. In order to maintain consistency, only coral-reef fishes (see definition above) were considered. The information from this analysis was used to construct a generalized "species contour" map for the Indo-Pacific region (Fig.3). 

  Endemism
Results of the analysis reveal both regional and local patterns of endemism. The largest definable endemic 

areas are consistent with the major biological regions 
that are more or less universally recognized: Indian Ocean, Western Pacific, Pacific Plate, and Eastern Pacific (Fig. 1). 

The eastern Pacific region clearly supports a highly unique fauna, which is actually more closely related to that of the western Atlantic. This relationship reflects a common ancestry, resulting from the interconnection of the two areas prior to the uplifting of the Central American landbridge, which probably occurred in the early Pliocene. Although few species are the same in both regions, there are numerous shared genera and twin-species complexes, involving a close relative on each side of the Central American isthmus (Allen and Robertson, 1994).

Fig. 1 Major biotic provinces of the tropical Indo-Pacific based on reef fish distributions: A - Indian Ocean; B - Western Pacific; C - Pacific Plate, and; D - Eastern Pacific. Percentages in parentheses indicate percentage of endemic species in various indicator groups that were utilized.


Fig. 1.  Major biotic provinces of the tropical Indo-Pacific based on reef fish distributions: 
A - Indian Ocean; B - Western Pacific; C - Pacific Plate, and; D - Eastern Pacific. 
Percentages in parentheses indicate percentage of endemic species in the  indicator groups.


The reef-fish fauna of the Indo-west and central Pacific is very similar at the family and generic levels. Many species too are wide-ranging in the region. Indeed, the majority of species have relatively wide distributions. However, the present analysis focused mainly on species that are at least restricted to one of the major biotic provinces, or exhibit more restricted ranges. The level of endemism in the Indian and Western Pacific oceans is similar, 25.9 and 28.0 percent respectively. In other words, about one of every four species found in either of these regions is endemic. Although the figure for the Pacific Plate is slightly less, it is nevertheless significant, and the present analysis supports the work of Springer (1982), who recognized the Plate as a discrete sub-unit of the Indo-Pacific region. Although this information may be useful for students of zoogeography it has little practical application in terms of conservation planning. Patterns of local endemism are far more useful for this purpose.  The ultimate goal of the present analysis was to identify local patterns of endemism. Figure 2 shows 35 local hotspots of endemism, basically areas that have three or more endemic species. Although most of these areas are relatively confined, consisting in many cases of a single island or small archipelago, the Hawaiian Islands and Red Sea are exceptions in occupying much greater areas. Nevertheless, their relative isolation and high levels of endemism set them apart as discrete units of endemism and it serves no useful purpose to divide them into finer units. Other prominent areas of endemism include the Marquesas, southern Japan, Mascarene Islands, Oman, Great Barrier Reef, Lesser Sunda Islands (Indonesia), Fiji, and Palawan (Philippines). 

Results of the analysis of endemism can be evaluated in a variety of ways. Three of the most obvious are presented here. Table 3 lists the 10 highest ranking areas in terms of total reef fish endemics.

 


Table 3. Top 10 areas for endemic reef fishes based on absolute numbers.

Locality Endemic spp.
Indonesia 58
Hawaii (USA) 49
Philippines 31
Southern Japan 26
Marquesas (France) 25
Australia 22
Oman 14
Papua New Guinea 12
Mexico 11
Fiji 10

The reader is reminded that the values in this table were determined from selected indicator groups only. The total number of endemics for all families from each area is estimated to be approximately twice this total judging from two areas (Hawaii and Marquesas) where accurate total figures are available (Randall, pers. comm.).

Another way to evaluate the endemism data involves ranking various areas on the basis of their percentage of endemic species in relation to the total reef-fish fauna (Table 4). The highest ranking areas using this

 methodology are generally isolated outposts (e.g. Pacific islands) or areas that were essentially isolated during past geological episodes (e.g. Red Sea).

Table 4. Top 10 coral-reef hotspots based on percentage of endemic reef fishes for the total fish fauna.

Locality

No.
species

No.
endemics

%
endemics

Hawaiian Is. 460 100 22
Baja California 400 80 21
Easter I. 88 17 19
Red Sea 900 114 13
Marquesas 398 47 12
Galapagos Is. 300 35 12
Clipperton I. 100 6 6
Isla del Coco 100 6 6
Mascarene Is. 923 42 5
Oman 716 24 3

The values shown in Table 4 are based on the overall fauna of each location, rather than being restricted to the indicator groups.


Fig. 2.  Hotspots for reef fish endemism in the tropical Indo-Pacific. 
The "coral triangle" is indicated by shading.


The last example ranks various locations on the basis of the number of endemic species per unit area (Table 5). Tiny isolated islands with significant endemism (> 5%) easily outrank other areas in the Indo-Pacific if this approach is used. 

Table 5. Top 10 locations for endemism on the basis of number of endemic fishes per unit area. 
Locality E/km2 *
Malpelo Island, Colombia .25
Clipperton Island .24
Easter Island .20
Isla del Coco .12
Rapa .08
Pitcairn Island .013
Christmas Island, Indian Ocean .10
Mauritius .004
Komodo Islands, Indonesia .002
Réunion .002
Togean Islands, Indonesia .001

* The ranking is determined by dividing the total endemic species (E) by the area (km2)

Species Diversity
Results for the analysis of species diversity are shown in Figure 3. The pattern presented here for reef fishes agrees well with other wide-ranging groups such as corals and molluscs (Veron 1995; Briggs 1999), and no doubt reflects diversity trends for other Indo-Pacific marine organisms. Basically, the center of diversity is the area occupied by eastern Indonesia and the southern Philippines. There is an attenuation of the fauna in all directions away from the center, although this trend is less pronounced in a westward direction. Numerous families of reef fishes exhibit similar patterns, for example the highly speciose Damselfishes (Allen 1975, 1991).

 

Most conservation actions are initiated at the country level or regional level, involving several adjacent countries. Therefore, it is useful to rank individual countries on the basis of overall species diversity (Table 6). The total for each country may at first appear very conservative, compared to various published works involving these areas. However, these figures apply to coral-reef fishes as defined above and do not reflect the total inshore fish fauna.

Table 6. Top 10 countries for reef-fish diversity

Country No. spp. Reference
Indonesia 1,820  Allen & Adrim in prep.
Australia 1,627 Hoese et al. in press
Philppines 1,525 Allen in press
Papua New Guinea 1,494 Kailola 1987-1991
Republic of Belau  1,254 Myers 1999
Japan 1,315 Masuda et al. 1984
Taiwan 1,172 Shen et al. 1993
New Caledonia  1,007 Rivaton et al. 1989
Fiji 919 Myers 1999
Federated States of 
Micronesia
900 Myers 1999

The majority of tropical marine families of fishes and invertebrates demonstrate their greatest concentration of species within the area encompassing Australia, Indonesia, Philippines, and Papua New Guinea (Briggs 1999). This region is sometimes referred to by zoogeographers as the Indo-Australian Archipelago or East Indian Triangle (Briggs 1999). The area (Fig. 2) has also been tagged
the "Coral Triangle" by conservation biologists (Werner and Allen 1998). Although its extraordinary biological rrichness is widely acknowledged, there is still a lack of basic taxonomic information for most locations within this huge region. However, unpublished field research on reef fishes by the author and various colleagues indicates the "epicenter" of the Coral Triangle, may well be situated in eastern Indonesia.


Fig. 3. Map of Indo-Pacific region showing diversity isopleths for tropical reef fishes. 


Discussion
Randall (1998) provided the best overview to date of Indo-Pacific fish zoogeography. His extensive data support those of the present study, particularly regarding principal hotspots for endemism. He also offers a plausible explanation for the East Indian center of marine biodiversity, attributing it to the following five factors: 1. relatively stable sea temperatures during ice ages; 2. large area size and diversity of habitat; 3. large numbers of shore fishes adapted to nutrient-rich waters of continental and large island shelves; 4. large numbers of species with larvae unable to survive in plankton-poor oceanic seas or having too short a life span in the pelagic realm for long transport in ocean currents, and 5. being an area that is the recipient of immigrating larvae of species evolved in peripheral locations. Randall further suggests that speciation may have occurred in the region as a result of an east-west barrier to fish dispersal caused by sea-level lowering during past glacial periods. He gave 65 examples of possible geminate species pairs that may have evolved as result of this barrier. 

Certainly on the basis of extraordinary biodiversity, as well as significant local endemism, the East Indian Coral Triangle should be near the top of the list of marine conservation priority areas. The need for protective measures is especially acute in the Philippines and Indonesia, both of which have experienced a rapid decline in marine resources over the past few decades. Much of the blame is attributed to the widespread use of illegal fishing methods (McAllister 1988). Muro-ami, cyanide, and explosives are among the most destructive practices resulting in wholesale degradation of coral environments. The muro-ami method, common in the Philippines involves setting a net over a coral reef into which a group of 10-30 swimmers drive the fishes. The swimmers are equipped with weighted (usually rocks) lines that are bounced up and down in an effort to break up the corals and drive out the fishes (Carpenter 1988). In the 1980s the use of cyanide emerged as the most effective method of capturing specimens for the 
aquarium and live food-fish trades. McAllister (1988) conservatively estimated that 75,000 kg or 1,500 drums of cyanide were being sprayed onto Philippines coral reefs each year. 

Although there are no authenticated cases of recent extinctions involving reef fishes, coral reefs and their myriad inhabitants are increasingly at risk as a result of human activities. Greenhouse emissions and resultant sea temperature increases, destructive fishing practices, and haphazard logging /agricultural methods that lead to erosion and consequent sedimentation of reefs are among the most obvious factors. There is an urgent need to establish an effective network of marine protected areas throughout the Indo-Pacific and other tropical seas. Admittedly, there is still much to learn concerning "source-sink" relationships of marine larva, but if we wait for researchers to provide this information it may already be too late for many species. It would be far better to implement a strategic network of MPAs as soon as possible. If a conservation "umbrella" was based on the 35 Indo-Pacific hotspots recognized in Figure 2 it is conservatively estimated that at least 90 percent of all fish species in the region would receive at least some measure of protection. Most importantly, the rarest elements of the fauna, the highly restricted endemics, would receive maximum attention following this approach.

Acknowledgments
I am grateful for the assistance of my Conservation International colleagues R. Mittermeier and T. Werner, who encouraged me to undertake this analysis and offered many useful suggestions. I also acknowledge the numerous contributions of J. Randall and V. Springer to our knowledge of Indo-Pacific fish zoogeography. Their works were crucial to this study. Thanks are also due C. Roberts, F. Wells, and J. Veron for their discussions and input concerning Indo-Pacific zoogeography.

Addendum


Fig. 4. Distribution of damselfish species numbers.


Fig. 5. Total number of reef fish species in all families.

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